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DuckDB One-Stop Multi-Source Data Integration: CSV, JSON, Excel, SQLite in One Query

Learn how DuckDB natively reads CSV, JSON, Excel, and SQLite simultaneously and performs cross-source joins in a single query. Build an automated P&L system with zero ETL setup.

The Data Analyst’s Ultimate Nightmare: Data Scattered Across Five Places

Picture this scenario:

  • Your payment transaction data lives in transactions_202605.csv, 500K rows
  • Logistics costs sit in another file logistics_costs.csv, 200K rows
  • Ad spend is an API-exported JSON file
  • Refund data is trapped in an Excel spreadsheet
  • Product catalog is stored in a SQLite database

Your boss asks for a P&L (Profit & Loss) statement. You need to pull all five data sources together, join them, aggregate, and compute margins.

With traditional tools, you need to:

  1. Load each file with pandas using different functions
  2. Clean each DataFrame
  3. merge() them all together (multiple times)
  4. Perform aggregation calculations

If the data is large, pandas runs out of memory. If there are many sources, the merge logic becomes a nightmare.

DuckDB takes a completely different approach — it reads all data sources natively and joins them in a single SQL query.


DuckDB’s Native Multi-Source Support

DuckDB’s core advantage is that it doesn’t require you to load data into a unified database first. It reads various file formats and databases directly, and performs join queries in memory.

Supported Formats at a Glance

FormatDuckDB Read Method
CSVCOPY ... FROM 'file.csv' (FORMAT CSV)
JSONCOPY ... FROM 'file.json' (FORMAT JSON)
ExcelCOPY ... FROM 'file.xlsx' (HEADER, SHEET 'Sheet1')
ParquetSELECT * FROM 'file.parquet'
SQLiteATTACH 'db.sqlite' AS alias (TYPE sqlite)
Remote HTTP filesINSTALL httpfs; COPY ... FROM 'https://...'
Other DuckDB filesATTACH 'other.db' AS alias

Here’s the key: all of these operations can be combined in a single query.


In Action: Automated P&L Statement System

Below shows how to combine CSV, JSON, Excel, and SQLite into a complete P&L statement using DuckDB.

Project Structure

project/
├── data/
│   ├── transactions_202605.csv      # Payment transactions (500K rows)
│   ├── logistics_costs.csv           # Logistics costs (200K rows)
│   ├── ad_spend.json                 # Ad spend (JSON)
│   ├── refunds.xlsx                  # Refund data (Excel)
│   └── products.db                   # Product catalog (SQLite)
├── generate.py                       # Core code
└── reports/
    ├── pl_statement.csv              # Output
    └── pl_statement.parquet          # Incremental read acceleration

Core Code

import duckdb
from pathlib import Path

# Connect to DuckDB in-memory database
con = duckdb.connect(':memory:')

# --- Step 1: Read all data sources ---

# 1. CSV - Payment transactions
con.execute("""
    COPY transactions FROM 'data/transactions_202605.csv'
    (FORMAT CSV, HEADER, DELIMITER ',');
""")

# 2. CSV - Logistics costs
con.execute("""
    COPY logistics FROM 'data/logistics_costs.csv'
    (FORMAT CSV, HEADER, DELIMITER ',');
""")

# 3. JSON - Ad spend
con.execute("""
    COPY ad_spend FROM 'data/ad_spend.json'
    (FORMAT JSON, AUTO_DETERMINE);
""")

# 4. Excel - Refund data
con.execute("""
    COPY refunds FROM 'data/refunds.xlsx'
    (HEADER, SHEET 'Refunds');
""")

# 5. SQLite - Product catalog
con.execute("""
    ATTACH 'data/products.db' AS products_db (TYPE sqlite);
    CREATE TABLE products AS
        SELECT * FROM products_db.main.products;
""")

# --- Step 2: Cross-source joined query ---

pl_sql = """
WITH
    -- Revenue: aggregate completed orders by month
    revenue AS (
        SELECT
            DATE_TRUNC('month', order_date) AS month,
            SUM(amount) AS gross_revenue,
            COUNT(DISTINCT order_id) AS order_count
        FROM transactions
        WHERE status = 'completed'
        GROUP BY 1
    ),

    -- Refunds: aggregate by month
    refund_amount AS (
        SELECT
            DATE_TRUNC('month', refund_date) AS month,
            SUM(refund_amount) AS total_refund
        FROM refunds
        GROUP BY 1
    ),

    -- Product cost: join transactions with products
    product_cost AS (
        SELECT
            DATE_TRUNC('month', t.order_date) AS month,
            SUM(t.quantity * p.cost_price) AS total_cost
        FROM transactions t
        JOIN products p ON t.product_id = p.product_id
        WHERE t.status = 'completed'
        GROUP BY 1
    ),

    -- Logistics cost: aggregate by month
    logistics_total AS (
        SELECT
            DATE_TRUNC('month', shipped_date) AS month,
            SUM(cost) AS total_logistics
        FROM logistics
        GROUP BY 1
    ),

    -- Ad spend: aggregate by month
    ad_total AS (
        SELECT
            DATE_TRUNC('month', start_date) AS month,
            SUM(spend) AS total_ad_spend
        FROM ad_spend
        GROUP BY 1
    )

-- Assemble final P&L statement
SELECT
    r.month,
    ROUND(r.gross_revenue, 2) AS gross_revenue,
    COALESCE(ref.total_refund, 0) AS refunds,
    ROUND(r.gross_revenue - COALESCE(ref.total_refund, 0), 2) AS net_revenue,
    ROUND(pc.total_cost, 2) AS product_cost,
    ROUND(lt.total_logistics, 2) AS logistics_cost,
    ROUND(at.total_ad_spend, 2) AS ad_spend,
    ROUND(
        r.gross_revenue
        - COALESCE(ref.total_refund, 0)
        - pc.total_cost
        - lt.total_logistics
        - at.total_ad_spend,
        2
    ) AS net_profit,
    ROUND(
        (r.gross_revenue
         - COALESCE(ref.total_refund, 0)
         - pc.total_cost
         - lt.total_logistics
         - at.total_ad_spend)
        / NULLIF(r.gross_revenue, 0) * 100,
        2
    ) AS profit_margin_pct
FROM revenue r
LEFT JOIN refund_amount ref USING (month)
LEFT JOIN product_cost pc USING (month)
LEFT JOIN logistics_total lt USING (month)
LEFT JOIN ad_total at USING (month)
ORDER BY r.month;
"""

result = con.execute(pl_sql).fetchdf()
print(result)

# Export results
result.to_csv('reports/pl_statement.csv', index=False)
result.to_parquet('reports/pl_statement.parquet')

con.close()

The output looks like:

        month  gross_revenue  refunds  net_revenue  product_cost  \
0  2026-05-01      1250000.00  45000.00    1205000.00      520000.00
1  2026-06-01      1380000.00  38000.00    1342000.00      560000.00

   logistics_cost  ad_spend  net_profit  profit_margin_pct
0          85000.0  120000.0    440000.0              36.54
1          92000.0  135000.0    455000.0              33.91

Advanced: MoM & YoY Analysis with Window Functions

Your boss wants trends. Window functions handle this in a single query:

trend_sql = """
WITH monthly_pl AS (
    SELECT
        DATE_TRUNC('month', order_date) AS month,
        SUM(amount) AS revenue
    FROM transactions
    WHERE status = 'completed'
    GROUP BY 1
    ORDER BY 1
)
SELECT
    month,
    revenue,
    -- Previous month revenue (MoM)
    LAG(revenue) OVER (ORDER BY month) AS prev_month_revenue,
    ROUND(
        (revenue - LAG(revenue) OVER (ORDER BY month))
        / NULLIF(LAG(revenue) OVER (ORDER BY month), 0) * 100,
        2
    ) AS mom_growth_pct,
    -- Same month last year (YoY)
    LAG(revenue, 12) OVER (ORDER BY month) AS same_month_last_year,
    ROUND(
        (revenue - LAG(revenue, 12) OVER (ORDER BY month))
        / NULLIF(LAG(revenue, 12) OVER (ORDER BY month), 0) * 100,
        2
    ) AS yoy_growth_pct
FROM monthly_pl;
"""

In pandas, calculating MoM and YoY requires merging the DataFrame twice, leading to verbose and error-prone code. DuckDB handles it with LAG() window functions in one SQL statement.


Why DuckDB Beats Other Approaches for Multi-Source Integration

Comparison Table

SolutionBest ForData Source CompatibilityOps CostSpeed
DuckDBMid-size analytics, automated reportsCSV/JSON/Excel/Parquet/SQLite nativeZeroExtremely fast
pandasFlexible data wranglingDepends on various read_xxx functionsZeroSlow with large data
PostgreSQL + viewsProduction-grade data platformRequires external extensionsNeeds DBAFast (but requires ETL)
Manual ExcelQuick one-off analysisCan open common formatsZeroVery slow

The key difference: DuckDB folds “reading different formats” from the ETL phase into the query phase.

You don’t need to:

  • Load CSVs into PostgreSQL first
  • Write Python JSON parsing scripts
  • Convert Excel to CSV

All format reads become SQL statements.


Next Level: Interactive Streamlit Dashboard

After computing the data, build a simple Streamlit dashboard so your client can explore by month:

import streamlit as st
import duckdb

con = duckdb.connect(':memory:')
con.execute("COPY transactions FROM 'data/transactions_202605.csv' (FORMAT CSV, HEADER)")
con.execute("COPY logistics FROM 'data/logistics_costs.csv' (FORMAT CSV, HEADER)")

filter_month = st.selectbox("Select Month", ['2026-05', '2026-04', '2026-03'])

query = f"""
    SELECT category, SUM(amount) as total
    FROM transactions
    WHERE DATE_TRUNC('month', order_date) = '{filter_month}-01'
    GROUP BY category
    ORDER BY total DESC
"""

st.dataframe(con.execute(query).fetchdf())

Run streamlit run dashboard.py, and you have a complete interactive data product.


DuckDB vs pandas: Why DuckDB Wins for Multi-Source Joins

Many analysts are used to the pandas read_csv + merge workflow. But for multi-source scenarios, DuckDB has several crushing advantages:

1. Memory efficiency

pandas loads all data into memory, and merge operations create multiple intermediate DataFrames, using 3-5x the original data size in memory. DuckDB uses columnar storage + vectorized execution, using less than 1/3 of the memory for the same data volume.

2. Code conciseness

Merging 5 data sources in pandas typically requires 30-50 lines (including error handling). DuckDB condenses data reading and joins into a few SQL statements, typically 10-20 lines.

3. Performance

For datasets exceeding one million rows, DuckDB’s vectorized execution engine is 10-50x faster than pandas. These aren’t theoretical benchmarks — they’re real-world results.


How Much Is This Worth?

A multi-source automated reporting system can be priced at:

  • Small business (< 500K rows/month, 2-3 data sources): $1,000 - $2,000
  • Mid-size company (multi-source + automated reports + dashboard): $3,000 - $7,000
  • Annual maintenance: 20% of project value/year

And your cost? A template script + two days of implementation + zero operational cost.

This pattern can be applied across industries:

  • Retail: Inventory analysis, sales trends
  • SaaS: Subscription analysis, churn tracking
  • Advertising: ROI tracking, multi-channel attribution
  • E-commerce: Multi-dimensional profit analysis, return rate tracking

The core idea never changes: DuckDB for multi-source aggregation → pandas/Streamlit for visualization → clients pay for your insights.


Next Steps

  1. Change file paths in the code to your local data files
  2. Run it with your company’s real data
  3. Export results as Parquet for 5x+ faster reads next time

Multi-source data integration is one of the most common data analysis scenarios. Master this with DuckDB, and you have your ticket into the data monetization arena.

📖 The full project template including data generation scripts, Streamlit dashboard template, and PDF export code is available on duckdblab.org — go grab it and start building.

📺 Watch video tutorials → DuckDB Lab YouTube

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